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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
11
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
10
transcription factor
1
control
Date released
11
August, 2017
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
19
Homo sapiens
Biosample type
13
in vitro differentiated cells
4
tissue
2
primary cell
Organ
22
pancreas
19
connective tissue
8
liver
5
epithelium
4
adipose tissue
3
brain
3
embryo
2
blood vessel
2
vasculature
1
musculature of body
Project
19
AMP
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
17
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed broadPeak
zippedFastqFolder
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
19 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
white adipose tissue
4
primary cell
brain pericyte
1
osteoblast
1
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