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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
4
Hi-C
Assay category
31
DNA binding
4
3D chromatin structure
Target of assay
19
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
control
Date released
31
August, 2017
10
December, 2017
5
August, 2021
4
February, 2023
4
July, 2019
2
February, 2021
2
May, 2021
1
May, 2022
1
October, 2019
Available data
353
bigWig
330
bam
256
fastq
151
tsv
149
bed narrowPeak
74
tagAlign
44
bigBed narrowPeak
41
bed broadPeak
35
bed bed3+
29
bed bedMethyl
29
bigBed bedMethyl
bigBed broadPeak
4
hdf5
Organism
35
Homo sapiens
Biosample type
25
tissue
6
in vitro differentiated cells
4
primary cell
Organ
19
pancreas
11
connective tissue
4
adipose tissue
3
brain
3
liver
2
blood vessel
2
epithelium
2
vasculature
Project
35
AMP
Genome assembly (visualization)
35
hg19
31
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
Hi-C
tissue
islet of Langerhans
19
white adipose tissue
4
liver
2
in vitro differentiated cells
adipocyte
6
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
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