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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
4
Hi-C
1
pCHi-C
Assay category
6
DNA binding
4
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
4
July, 2019
3
August, 2017
3
August, 2021
1
February, 2021
Available data
924
bam
844
bigWig
644
bed narrowPeak
486
fastq
485
bigBed narrowPeak
204
tagAlign
200
tsv
110
bed broadPeak
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
7
primary cell
3
tissue
1
cell line
Organ
22
pancreas
19
connective tissue
8
liver
5
epithelium
4
adipose tissue
3
brain
3
embryo
2
blood vessel
2
vasculature
1
musculature of body
Project
11
AMP
Genome assembly (visualization)
11
hg19
6
GRCh38
Lab
11
AMP-T2D consortium
files.file_type!
bigBed broadPeak
organ_slims!
spleen
BIOSAMPLE
ASSAY
11 results
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Clear Filters
ChIP-seq
Hi-C
pCHi-C
primary cell
hepatocyte
3
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
liver
3
cell line
HepG2
1
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