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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 53ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 53DNA binding
  • 53D chromatin structure
  • 5DNA accessibility
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 19transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 33August, 2017
  • 15December, 2017
  • 5August, 2021
  • 4February, 2023
  • 4July, 2019
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1October, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 69Homo sapiens
Biosample type
  • 29tissue
  • 25in vitro differentiated cells
  • 10primary cell
  • 3stem cell
  • 2cell line
Organ
  • 22pancreas
  • 19connective tissue
  • 8liver
  • 5epithelium
  • 4adipose tissue
  • 3brain
  • 3embryo
  • 2blood vessel
  • 2vasculature
  • 1musculature of body
Project
  • 69AMP
Genome assembly (visualization)
  • 69hg19
  • 54GRCh38
Lab
  • 65AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 2inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

69 results

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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans21
white adipose tissue4
liver3
skeletal muscle tissue1
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
primary cell
hepatocyte3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
stem cell
hESC3
cell line
HepG21
Panc11
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