Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
3
Hi-C
Assay category
21
DNA binding
3
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
2
July, 2019
2
September, 2017
1
October, 2019
Available data
869
bam
773
bigWig
484
tsv
474
fastq
343
bed narrowPeak
bigBed narrowPeak
80
zippedFastqFolder
40
bed bed3+
34
bed broadPeak
25
tagAlign
20
bigBed broadPeak
9
hic
8
bedpe bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
3
cool
3
hdf5
1
tar
Organism
24
Homo sapiens
Biosample type
21
tissue
2
primary cell
1
cell line
Organ
22
pancreas
19
connective tissue
8
liver
5
epithelium
4
adipose tissue
3
brain
3
embryo
2
blood vessel
2
vasculature
1
musculature of body
Project
24
AMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bigBed narrowPeak
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
24 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
primary cell
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
Download