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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 9ChIP-seq
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2snATAC-seq
Assay category
  • 9DNA binding
  • 6DNA accessibility
Target of assay
  • 9control
Date released
  • 5December, 2017
  • 4February, 2023
  • 2August, 2017
  • 2August, 2021
  • 2February, 2021
  • 2September, 2017
  • 1July, 2025
  • 1May, 2022
Available data
  • 3392bam
  • bigWig
  • 1817bed narrowPeak
  • 1601tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 274bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 18Homo sapiens
Biosample type
  • 11in vitro differentiated cells
  • 5tissue
  • 1cell line
  • 1primary cell
  • 1stem cell
Organ
  • 8connective tissue
  • 2liver
  • 2musculature of body
  • 2pancreas
  • 1embryo
Project
  • 19AMP
Genome assembly (visualization)
  • 18hg19
  • 10GRCh38
Lab
  • 16AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 2inconsistent ontology term
  • 1audit script error
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

19 results

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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte111
immature adipocyte2
Posterior foregut1
definitive endodermal cell1
osteoblast1
tissue
islet of Langerhans2
skeletal muscle tissue2
liver1
cell line
HepG21
primary cell
osteoblast1
stem cell
hESC1
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