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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
4
ATAC-seq
4
Hi-C
3
ChIP-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
195
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
183
June, 2019
6
October, 2019
5
August, 2021
4
February, 2023
4
July, 2019
2
February, 2021
2
May, 2021
1
May, 2022
1
November, 2020
Available data
2703
bam
2546
bigWig
1603
bed narrowPeak
1183
tsv
951
bigBed narrowPeak
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
ibed
1
tagAlign bed3+
1
vcf
Organism
208
Homo sapiens
Biosample type
164
tissue
37
primary cell
6
in vitro differentiated cells
1
cell line
Organ
78
kidney
36
limb
34
musculature of body
33
brain
30
heart
21
epithelium
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
7
liver
pancreas
4
artery
4
eye
2
nerve
2
vein
1
adipose tissue
Project
208
AMP
Genome assembly (visualization)
193
GRCh38
187
hg19
Lab
204
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
1
audit script error
files.file_type!
fastq
ibed
organ_slims!
pancreas
BIOSAMPLE
ASSAY
208 results
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DNase-seq
ATAC-seq
Hi-C
ChIP-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
See all biosamples
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