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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 53ChIP-seq
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 209DNA accessibility
  • 53DNA binding
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 19transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 33August, 2017
  • 15December, 2017
  • 9November, 2018
  • 7October, 2019
  • 5August, 2021
  • 4February, 2023
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 268Homo sapiens
Biosample type
  • 205tissue
  • 33primary cell
  • 25in vitro differentiated cells
  • 3stem cell
  • 2cell line
Organ
  • 78kidney
  • 36limb
  • 34musculature of body
  • 32brain
  • 30heart
  • 28pancreas
  • 26connective tissue
  • 19epithelium
  • 18ureter
  • 12liver
  • 11vasculature
  • 9blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 268AMP
Genome assembly (visualization)
  • 257GRCh38
  • 245hg19
Lab
  • 264AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
files.file_type!
  • hdf5
BIOSAMPLE
ASSAY

268 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
stem cell
hESC3
cell line
HepG21
Panc11
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