Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
6
ChIP-seq
4
Hi-C
4
RRBS
1
WGBS
1
pCHi-C
Assay category
37
DNA accessibility
6
DNA binding
5
DNA methylation
4
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
32
June, 2019
7
July, 2019
6
November, 2018
4
August, 2017
3
August, 2021
1
February, 2021
Available data
924
bam
844
bigWig
644
bed narrowPeak
486
fastq
485
bigBed narrowPeak
204
tagAlign
200
tsv
110
bed broadPeak
101
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
53
Homo sapiens
Biosample type
35
tissue
16
primary cell
2
cell line
Organ
82
kidney
38
heart
38
musculature of body
37
brain
37
limb
35
pancreas
30
connective tissue
27
epithelium
18
ureter
16
liver
15
vasculature
12
blood vessel
8
adipose tissue
5
eye
4
artery
3
embryo
spleen
2
nerve
2
vein
1
pericardium
Project
53
AMP
Genome assembly (visualization)
44
GRCh38
42
hg19
Lab
53
AMP-T2D consortium
organ_slims!
spleen
BIOSAMPLE
ASSAY
53 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
RRBS
WGBS
pCHi-C
tissue
brain
14
1
liver
2
3
1
frontal cortex
2
Ammon's horn
1
caudate nucleus
1
+ See 10 more…
primary cell
hepatocyte
1
3
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
choroid plexus epithelial cell
1
1
+ See 3 more…
cell line
HepG2
1
1
See all biosamples
Download