Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1429
candidate regulatory elements
1203
target gene predictions
924
histone modifications
801
accessible chromatin
792
binding sites
112
variant allelic effects
33
chromatin state
13
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2230
February, 2021
1418
September, 2022
324
November, 2021
292
February, 2024
270
May, 2021
261
June, 2020
91
October, 2022
78
May, 2020
56
January, 2021
52
August, 2021
48
January, 2020
42
March, 2020
41
November, 2022
30
February, 2023
27
August, 2017
16
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
4
January, 2022
3
September, 2018
2
November, 2020
2
September, 2023
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5329
bed bed3+
832
tsv
bed bed9
472
bigWig
108
txt
34
bed bed9+
34
bigBed bed9
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5329
Homo sapiens
Biosample type
1986
cell line
1506
tissue
1489
primary cell
344
in vitro differentiated cells
3
stem cell
Organ
547
epithelium
330
connective tissue
brain
309
kidney
281
musculature of body
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
175
limb
173
heart
165
skin of body
163
vasculature
159
pancreas
137
large intestine
123
blood vessel
112
extraembryonic component
101
liver
98
eye
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
46
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
4929
AMP
324
ENCODE
59
T1D
16
LungMap
1
ITG
Genome assembly (visualization)
5321
hg19
770
GRCh38
1
hg18
files.file_type!
bed bed9
organ_slims!
brain
lung
BIOSAMPLE
TYPE
5329 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
breast cancer cell
11
9
+ See 738 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
kidney
29
14
2
10
1
1
1
muscle of arm
33
16
1
1
small intestine
29
17
1
+ See 157 more…
primary cell
monocyte
2
86
16
1
1
1
CD8-positive, alpha-beta T cell
7
5
30
2
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
2
2
1
B cell
14
10
4
+ See 303 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 100 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
See all biosamples
Download