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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
DNase-seq
11
ChIP-seq
4
ATAC-seq
Assay category
24
DNA accessibility
11
DNA binding
Target of assay
9
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
19
June, 2019
7
August, 2017
5
October, 2018
1
February, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
460
bam
443
bigWig
401
tsv
44
fastq
31
bed narrowPeak
28
bigBed narrowPeak
24
bed bed3+
21
bed broadPeak
20
bigBed broadPeak
8
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
35
Homo sapiens
Biosample type
35
tissue
Organ
444
liver
226
pancreas
206
brain
191
heart
183
kidney
153
epithelium
135
vasculature
131
blood vessel
92
limb
88
connective tissue
74
artery
61
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
17
adipose tissue
15
embryo
14
spleen
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
35
AMP
Genome assembly (visualization)
35
hg19
33
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
35 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
renal pelvis
10
omental fat pad
2
3
1
left renal pelvis
4
right renal pelvis
4
white adipose tissue
4
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