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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
4
Hi-C
Assay category
7
DNA accessibility
4
3D chromatin structure
Date released
187
June, 2019
33
August, 2017
15
December, 2017
12
March, 2020
11
October, 2019
9
November, 2018
7
August, 2021
4
February, 2023
4
July, 2019
3
October, 2022
2
February, 2021
2
May, 2021
2
November, 2019
2
September, 2017
1
August, 2018
1
May, 2022
1
November, 2020
Available data
250
bam
207
bigWig
189
bed narrowPeak
70
bigBed narrowPeak
49
tagAlign
16
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
11
Homo sapiens
Biosample type
5
tissue
2
cell line
2
in vitro differentiated cells
2
primary cell
Organ
4
blood vessel
4
limb
4
vasculature
2
artery
2
epithelium
2
nerve
2
pancreas
2
vein
1
heart
Project
11
AMP
Genome assembly (visualization)
11
hg19
8
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
lymph node
BIOSAMPLE
ASSAY
11 results
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DNase-seq
Hi-C
tissue
tibial artery
2
tibial nerve
2
heart
1
cell line
Panc1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
primary cell
endothelial cell of umbilical vein
2
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