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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
9
DNase-seq
4
WGBS
2
RRBS
1
Hi-C
Assay category
21
DNA binding
9
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
6
November, 2018
4
June, 2019
4
October, 2019
2
July, 2019
2
September, 2017
Available data
731
bam
654
bigWig
471
fastq
422
tsv
241
bed narrowPeak
117
bigBed narrowPeak
80
zippedFastqFolder
31
bed bed3+
23
bed broadPeak
19
tagAlign
9
bigBed broadPeak
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
37
Homo sapiens
Biosample type
35
tissue
2
cell line
Organ
82
kidney
38
heart
38
musculature of body
37
brain
37
limb
35
pancreas
30
connective tissue
27
epithelium
18
ureter
16
liver
15
vasculature
12
blood vessel
8
adipose tissue
5
eye
4
artery
3
embryo
3
spleen
2
nerve
2
vein
1
pericardium
Project
37
AMP
Genome assembly (visualization)
35
GRCh38
31
hg19
Lab
37
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
ibed
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
RRBS
Hi-C
tissue
islet of Langerhans
21
1
body of pancreas
4
2
pancreas
2
2
1
tibial nerve
2
cell line
Panc1
1
1
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