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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
9
DNase-seq
6
WGBS
2
RRBS
1
Hi-C
Assay category
25
DNA binding
9
DNA accessibility
8
DNA methylation
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
11
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
25
August, 2017
7
November, 2018
5
June, 2019
2
July, 2019
2
October, 2019
2
September, 2017
Available data
1131
bam
1048
bigWig
818
tsv
515
fastq
227
bed narrowPeak
101
bigBed narrowPeak
80
zippedFastqFolder
35
bed bed3+
27
tagAlign
24
bed broadPeak
9
bigBed broadPeak
8
bed bedMethyl
8
bedpe bed3+
8
bigBed bedMethyl
7
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
43
Homo sapiens
Biosample type
41
tissue
2
cell line
Organ
82
kidney
38
heart
38
musculature of body
37
brain
37
limb
35
pancreas
30
connective tissue
27
epithelium
18
ureter
16
liver
15
vasculature
12
blood vessel
8
adipose tissue
5
eye
4
artery
3
embryo
3
spleen
2
nerve
2
vein
1
pericardium
Project
43
AMP
Genome assembly (visualization)
41
GRCh38
35
hg19
Lab
43
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
March, 2023
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
DNase-seq
WGBS
RRBS
Hi-C
tissue
islet of Langerhans
21
1
body of pancreas
4
2
pancreas
2
2
1
white adipose tissue
4
adipose tissue
2
+ See 1 more…
cell line
Panc1
1
1
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