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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
6
RRBS
2
ChIP-seq
2
Hi-C
Assay category
16
DNA accessibility
6
DNA methylation
2
3D chromatin structure
2
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
broad histone mark
Date released
14
June, 2019
8
July, 2019
2
August, 2021
2
October, 2019
Available data
273
bam
259
bigWig
234
fastq
156
tsv
111
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
6
tagAlign
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
26
Homo sapiens
Biosample type
26
primary cell
Organ
82
kidney
38
heart
38
musculature of body
37
brain
37
limb
30
connective tissue
29
pancreas
26
epithelium
18
ureter
15
liver
15
vasculature
12
blood vessel
8
adipose tissue
5
eye
4
artery
3
spleen
2
embryo
2
nerve
2
vein
1
pericardium
Project
26
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
26 results
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DNase-seq
RRBS
ChIP-seq
Hi-C
primary cell
hepatocyte
1
1
2
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
epithelial cell of proximal tubule
1
1
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