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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
DNase-seq
4
ChIP-seq
2
Hi-C
1
snATAC-seq
Assay category
43
DNA accessibility
4
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
broad histone mark
1
RNA binding protein
1
narrow histone mark
1
transcription factor
Date released
38
June, 2019
6
October, 2019
2
July, 2019
2
November, 2017
1
May, 2022
Available data
237
bam
218
bigWig
189
bed narrowPeak
126
bigBed narrowPeak
77
tsv
59
bed broadPeak
46
bigBed broadPeak
45
bed bed3+
21
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
fastq
5
hic
4
bedpe bed3+
2
hdf5
1
tar
1
txt
Organism
49
Homo sapiens
Biosample type
38
tissue
11
primary cell
Organ
78
kidney
71
liver
41
brain
36
limb
34
musculature of body
30
heart
29
pancreas
28
connective tissue
27
epithelium
19
vasculature
18
ureter
15
blood vessel
6
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
49
AMP
Genome assembly (visualization)
48
hg19
44
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
49 results
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DNase-seq
ChIP-seq
Hi-C
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
coronary artery
2
tibial artery
2
ascending aorta
1
+ See 3 more…
primary cell
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
skeletal muscle cell
1
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