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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
DNase-seq
21
ChIP-seq
1
Hi-C
1
snATAC-seq
Assay category
41
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
37
June, 2019
19
August, 2017
2
November, 2018
2
October, 2019
2
September, 2017
1
May, 2022
Available data
746
bam
691
bigWig
473
fastq
426
tsv
274
bed narrowPeak
138
bigBed narrowPeak
80
zippedFastqFolder
67
bed broadPeak
63
bed bed3+
40
bigBed broadPeak
34
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
9
bedpe bed3+
9
hic
7
txt
3
cool
1
bedpe
1
hdf5
Organism
63
Homo sapiens
Biosample type
60
tissue
2
cell line
1
primary cell
Organ
78
kidney
71
liver
41
brain
36
limb
34
musculature of body
30
heart
29
pancreas
28
connective tissue
27
epithelium
19
vasculature
18
ureter
15
blood vessel
6
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
63
AMP
Genome assembly (visualization)
62
GRCh38
61
hg19
Lab
63
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
63 results
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DNase-seq
ChIP-seq
Hi-C
snATAC-seq
tissue
islet of Langerhans
21
muscle of arm
17
muscle of leg
13
body of pancreas
4
pancreas
2
+ See 3 more…
cell line
Panc1
1
1
primary cell
skeletal muscle cell
1
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