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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
5
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
136
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
61
histone
61
histone modification
46
transcription factor
41
narrow histone mark
29
control
20
broad histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
59
November, 2017
50
May, 2020
23
August, 2017
4
August, 2021
3
November, 2018
2
June, 2019
1
February, 2021
1
July, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
143
Homo sapiens
Biosample type
76
tissue
60
cell line
7
primary cell
Organ
159
brain
143
liver
78
kidney
50
connective tissue
49
musculature of body
48
pancreas
36
heart
36
limb
31
epithelium
25
vasculature
21
blood vessel
18
ureter
14
adipose tissue
10
artery
4
eye
4
vein
3
embryo
2
nerve
1
pituitary gland
1
spleen
Project
143
AMP
Genome assembly (visualization)
99
hg19
74
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
143 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
tissue
liver
73
2
right lobe of liver
1
cell line
HepG2
59
1
primary cell
hepatocyte
4
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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