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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
32
DNase-seq
3
Hi-C
1
FAIRE-seq
Assay category
94
DNA binding
33
DNA accessibility
3
3D chromatin structure
Target of assay
91
histone
91
histone modification
58
broad histone mark
33
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
63
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
4
July, 2019
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
0
txt
Organism
130
Homo sapiens
Biosample type
116
tissue
14
primary cell
Organ
285
liver
166
kidney
130
brain
119
pancreas
94
heart
88
bone element
85
vasculature
84
limb
81
blood vessel
81
epithelium
54
blood
54
bodily fluid
48
musculature of body
47
connective tissue
26
nerve
25
artery
18
ureter
14
adipose tissue
13
spleen
13
vein
6
eye
4
skeleton
3
embryo
Project
130
AMP
Genome assembly (visualization)
126
GRCh38
68
hg19
Lab
130
AMP-T2D consortium
Audit category:
3
missing controlled_by
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
brain
6
14
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 14 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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