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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
188
total RNA-seq
45
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
424
DNA binding
188
Transcription
55
DNA accessibility
7
DNA methylation
Target of assay
303
transcription factor
102
histone
102
histone modification
81
recombinant protein
57
narrow histone mark
56
RNA binding protein
45
broad histone mark
22
chromatin remodeller
16
control
5
other context
5
other post-translational modification
Date released
553
February, 2021
334
November, 2017
303
May, 2021
274
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
77
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
49
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
21
May, 2022
20
March, 2020
14
October, 2017
8
January, 2018
7
August, 2020
7
February, 2023
7
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
June, 2018
3
September, 2020
Available data
762
bam
674
bigWig
413
bed narrowPeak
412
fastq
385
bigBed narrowPeak
189
tsv
128
tagAlign
79
bed broadPeak
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
674
Homo sapiens
Biosample type
325
cell line
250
tissue
99
primary cell
Organ
490
liver
68
brain
12
blood
12
bodily fluid
7
pancreas
6
epithelium
6
spleen
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
Project
629
AMP
45
T1D
Genome assembly (visualization)
612
hg19
565
GRCh38
Lab
629
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2018
BIOSAMPLE
ASSAY
674 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
312
1
GM12878
12
tissue
liver
31
143
2
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
+ See 8 more…
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 23 more…
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