Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1691
candidate regulatory elements
1291
target gene predictions
969
histone modifications
891
accessible chromatin
807
binding sites
120
variant allelic effects
41
chromatin state
11
caQTL
10
eQTL
9
gene expression
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2385
February, 2021
1655
September, 2022
331
November, 2021
283
June, 2020
281
May, 2021
253
February, 2024
131
May, 2020
99
October, 2022
64
January, 2020
56
January, 2021
52
August, 2021
45
March, 2020
41
November, 2022
39
May, 2024
34
August, 2017
28
February, 2023
19
April, 2020
15
May, 2022
11
November, 2019
9
October, 2019
5
January, 2022
5
September, 2023
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
1
May, 2019
Available data
5840
bed bed3+
882
tsv
857
bed bed9
536
bigWig
108
txt
38
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5806
Homo sapiens
Biosample type
2060
cell line
1819
tissue
1620
primary cell
347
in vitro differentiated cells
4
stem cell
Organ
568
epithelium
338
connective tissue
310
kidney
309
brain
281
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
176
heart
175
limb
171
vasculature
165
skin of body
161
pancreas
137
large intestine
128
blood vessel
112
extraembryonic component
112
liver
98
eye
93
stomach
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
lymphatic vessel
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5441
AMP
331
ENCODE
60
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
5837
hg19
787
GRCh38
1
hg18
organ_slims!
artery
uterus
BIOSAMPLE
TYPE
5852 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
gene expression
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
breast cancer cell
11
9
+ See 757 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
kidney
29
14
2
10
1
1
1
1
brain
29
16
3
2
1
1
muscle of arm
33
16
1
1
+ See 211 more…
primary cell
monocyte
2
86
18
1
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
17
10
6
endothelial cell
3
7
1
15
2
2
2
1
+ See 324 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 103 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download