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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
DNase-seq
6
ChIP-seq
4
Hi-C
1
pCHi-C
Assay category
83
DNA accessibility
6
DNA binding
4
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
80
June, 2019
5
August, 2021
3
August, 2017
3
November, 2018
1
February, 2021
1
July, 2019
1
March, 2020
Available data
825
bam
753
bigWig
624
bed narrowPeak
465
fastq
462
bigBed narrowPeak
198
tsv
141
bed broadPeak
141
bigBed broadPeak
91
bed bed3+
86
tagAlign
64
xls
62
txt
7
bed bedMethyl
7
bigBed bedMethyl
6
csv
3
hic
3
tar
2
bedpe bed3+
1
bed bed3
1
hdf5
1
vcf
Organism
94
Homo sapiens
Biosample type
76
tissue
16
primary cell
2
cell line
Organ
79
kidney
36
limb
36
musculature of body
36
pancreas
35
brain
33
heart
27
connective tissue
27
epithelium
18
ureter
16
vasculature
15
liver
14
blood vessel
6
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
94
AMP
Genome assembly (visualization)
89
GRCh38
87
hg19
Lab
92
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
94 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
kidney
13
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 6 more…
primary cell
hepatocyte
1
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
+ See 6 more…
cell line
HepG2
1
1
See all biosamples
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