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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
3
Hi-C
1
pCHi-C
Assay category
6
DNA binding
5
DNA accessibility
3
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
4
August, 2021
3
August, 2017
3
November, 2018
2
June, 2019
1
February, 2021
1
July, 2019
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
15
Homo sapiens
Biosample type
7
tissue
6
primary cell
2
cell line
Organ
79
kidney
36
limb
36
musculature of body
36
pancreas
35
brain
33
heart
27
connective tissue
27
epithelium
18
ureter
16
vasculature
15
liver
14
blood vessel
6
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
0
lymph node
Project
15
AMP
Genome assembly (visualization)
15
hg19
11
GRCh38
Lab
14
AMP-T2D consortium
1
Bing Ren, UCSD
BIOSAMPLE
ASSAY
15 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
tissue
liver
3
2
1
right lobe of liver
1
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
cell line
HepG2
1
1
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