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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
3
pCHi-C
2
Capture-C
2
total RNA-seq
1
Hi-C
1
snATAC-seq
Assay category
5
DNA accessibility
2
Transcription
1
3D chromatin structure
Date released
4
February, 2023
July, 2019
2
August, 2021
2
March, 2020
2
May, 2021
1
February, 2021
1
May, 2022
1
October, 2019
Available data
bam
3069
bigWig
1797
bed narrowPeak
1535
tsv
1358
fastq
1027
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
22
bedpe bed3+
21
hic
13
bed bedMethyl
13
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
8
in vitro differentiated cells
2
cell line
2
primary cell
1
tissue
Organ
6
connective tissue
1
liver
1
musculature of body
1
pancreas
Project
13
AMP
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
month_released!
July, 2019
organ_slims!
vein
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ATAC-seq
pCHi-C
Capture-C
total RNA-seq
Hi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
osteoblast
1
+ See 1 more…
cell line
HepG2
1
Panc1
1
primary cell
CD8-positive, alpha-beta T cell
2
tissue
skeletal muscle tissue
1
See all biosamples
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