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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
Assay category
24
Transcription
3
3D chromatin structure
Target of assay
3
control
Date released
14
July, 2019
12
February, 2020
2
March, 2020
1
October, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
29
Homo sapiens
Biosample type
23
tissue
6
primary cell
Organ
497
connective tissue
439
pancreas
405
adipose tissue
182
liver
168
heart
161
epithelium
70
blood vessel
70
vasculature
58
artery
58
bone element
29
brain
24
kidney
17
embryo
10
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed broadPeak
organ_slims!
pericardium
BIOSAMPLE
ASSAY
29 results
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total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
tissue
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
+ See 11 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
See all biosamples
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