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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
Assay category
32
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
3
control
Date released
30
June, 2019
14
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
October, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
61
Homo sapiens
Biosample type
50
tissue
11
primary cell
Organ
505
connective tissue
pancreas
407
adipose tissue
198
heart
187
liver
177
epithelium
102
kidney
81
vasculature
79
blood vessel
62
artery
61
brain
58
bone element
43
limb
43
musculature of body
18
ureter
17
embryo
9
eye
7
nerve
2
intestine
2
spleen
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
44
GRCh38
37
hg19
Lab
61
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
61 results
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DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
tissue
brain
14
1
frontal cortex
2
2
1
Ammon's horn
1
1
1
cerebellum (Hemisphere)
1
1
1
caudate nucleus
1
1
+ See 18 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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