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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
2
Capture-C
2
total RNA-seq
Assay category
60
DNA accessibility
54
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
2
August, 2021
2
May, 2021
Available data
270
bigWig
234
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
157
Homo sapiens
Biosample type
155
primary cell
2
in vitro differentiated cells
Organ
80
epithelium
80
pancreas
2
connective tissue
Project
153
HPAP
4
AMP
Genome assembly (visualization)
4
hg19
Lab
AMP-T2D consortium
153
Klaus Kaestner, Upenn
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
lab.title!
AMP-T2D consortium
organ_slims!
heart
BIOSAMPLE
ASSAY
157 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Capture-C
total RNA-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
CD8-positive, alpha-beta T cell
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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