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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 49ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 209DNA accessibility
  • 49DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 23histone
  • 23histone modification
  • 17transcription factor
  • 12narrow histone mark
  • 11broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 29August, 2017
  • 15December, 2017
  • 9November, 2018
  • 8October, 2019
  • 5August, 2021
  • 4February, 2023
  • 4July, 2019
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 3367bam
  • 3151bigWig
  • 1800bed narrowPeak
  • 1600tsv
  • 1332fastq
  • 1034bigBed narrowPeak
  • 393tagAlign
  • 315bed broadPeak
  • 280bigBed broadPeak
  • 269bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 269Homo sapiens
Biosample type
  • 202tissue
  • 37primary cell
  • 24in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 27pancreas
  • 26connective tissue
  • 21epithelium
  • 18ureter
  • 13vasculature
  • 12liver
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 269AMP
Genome assembly (visualization)
  • 254GRCh38
  • 246hg19
Lab
  • 265AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

269 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans19
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte611
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
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