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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 202DNase-seq
  • 41ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 207DNA accessibility
  • 41DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 24histone
  • 24histone modification
  • 12broad histone mark
  • 12narrow histone mark
  • 9transcription factor
  • 8control
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 21August, 2017
  • 15December, 2017
  • 8October, 2019
  • 7November, 2018
  • 5August, 2021
  • 4February, 2023
  • 4July, 2019
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 2832bam
  • 2687bigWig
  • 1534bed narrowPeak
  • 1437tsv
  • 798bigBed narrowPeak
  • 796fastq
  • 387tagAlign
  • 305bed broadPeak
  • 275bigBed broadPeak
  • 259bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 259Homo sapiens
Biosample type
  • 193tissue
  • 37primary cell
  • 23in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 78kidney
  • 36limb
  • 34brain
  • 34musculature of body
  • 30heart
  • 23pancreas
  • 21connective tissue
  • 21epithelium
  • 18ureter
  • 13vasculature
  • 12liver
  • 11blood vessel
  • 4artery
  • 4eye
  • 3embryo
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 259AMP
Genome assembly (visualization)
  • 244GRCh38
  • 236hg19
Lab
  • 255AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 4missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

259 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart18
muscle of arm17
islet of Langerhans15
brain13
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte511
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
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