Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15ChIP-seq
  • 2DNase-seq
Assay category
  • 15DNA binding
  • 2DNA accessibility
Target of assay
  • 10histone
  • 10histone modification
  • 5broad histone mark
  • 5control
  • 5narrow histone mark
Date released
  • 15December, 2017
  • 2November, 2018
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 17Homo sapiens
Biosample type
  • 12in vitro differentiated cells
  • 3stem cell
  • 2tissue
Organ
  • 3embryo
  • 1brain
  • 1liver
Project
  • 17AMP
Genome assembly (visualization)
  • 17GRCh38
  • 17hg19
Lab
  • 17AMP-T2D consortium
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

17 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
in vitro differentiated cells
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
stem cell
hESC3
tissue
brain1
liver1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego