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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 195DNase-seq
  • 25ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 200DNA accessibility
  • 25DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 17transcription factor
  • 6histone
  • 6histone modification
  • 5narrow histone mark
  • 2control
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 187June, 2019
  • 21August, 2017
  • 8October, 2019
  • 5August, 2021
  • 4February, 2023
  • 4July, 2019
  • 2February, 2021
  • 2May, 2021
  • 1December, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 3134bam
  • 2954bigWig
  • 1617bed narrowPeak
  • 1600tsv
  • 1094fastq
  • 894bigBed narrowPeak
  • 359tagAlign
  • 236bed bed3+
  • 229bed broadPeak
  • 201bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 236Homo sapiens
Biosample type
  • 182tissue
  • 37primary cell
  • 13in vitro differentiated cells
  • 3cell line
  • 1stem cell
Organ
  • 78kidney
  • 36limb
  • 34musculature of body
  • 33brain
  • 30heart
  • 26connective tissue
  • 21epithelium
  • 18ureter
  • 14pancreas
  • 13vasculature
  • 11blood vessel
  • 9liver
  • 5adipose tissue
  • 4artery
  • 4eye
  • 2nerve
  • 2vein
Project
  • 236AMP
Genome assembly (visualization)
  • 221GRCh38
  • 213hg19
Lab
  • 232AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 12missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
files.read_length!
  • 36
BIOSAMPLE
ASSAY

236 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart18
muscle of arm17
kidney13
muscle of leg13
brain12
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte711
immature adipocyte2
osteoblast1
preadipocyte1
cell line
Panc111
HepG21
stem cell
hESC1
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