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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 42ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2snATAC-seq
  • 2total RNA-seq
Assay category
  • 210DNA accessibility
  • 42DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 19histone
  • 19histone modification
  • 14transcription factor
  • 12narrow histone mark
  • 9control
  • 7broad histone mark
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 28August, 2017
  • 9December, 2017
  • 9November, 2018
  • 8October, 2019
  • 5August, 2021
  • 4February, 2023
  • 4July, 2019
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1July, 2025
  • 1May, 2022
  • 1November, 2020
Available data
  • 3248bam
  • 3059bigWig
  • 1725bed narrowPeak
  • 1596tsv
  • 1192fastq
  • 966bigBed narrowPeak
  • 398tagAlign
  • 317bed broadPeak
  • 281bigBed broadPeak
  • 263bed bed3+
  • 161txt
  • 113zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 262Homo sapiens
Biosample type
  • 204tissue
  • 37primary cell
  • 18in vitro differentiated cells
  • 3cell line
  • 1stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 35musculature of body
  • 30heart
  • 29pancreas
  • 22connective tissue
  • 21epithelium
  • 18ureter
  • 13liver
  • 13vasculature
  • 11blood vessel
  • 4adipose tissue
  • 4artery
  • 4eye
  • 2embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 263AMP
Genome assembly (visualization)
  • 248GRCh38
  • 239hg19
Lab
  • 258AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 12missing controlled_by
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
files.read_length!
  • 50
BIOSAMPLE
ASSAY

263 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
total RNA-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte411
Posterior foregut2
definitive endodermal cell2
immature adipocyte2
pancreatic endoderm2
cell line
Panc111
HepG21
stem cell
hESC1
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