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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 28ChIP-seq
  • 9DNase-seq
Assay category
  • 28DNA binding
  • 9DNA accessibility
Target of assay
  • 19histone
  • 19histone modification
  • 11broad histone mark
  • 8narrow histone mark
  • 7control
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 14December, 2017
  • 12August, 2017
  • 9November, 2018
  • 2September, 2017
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 37Homo sapiens
Biosample type
  • 23tissue
  • 12in vitro differentiated cells
  • 2stem cell
Organ
  • 15pancreas
  • 4liver
  • 3embryo
  • 2brain
  • 1adipose tissue
  • 1connective tissue
  • 1spleen
Project
  • 37AMP
Genome assembly (visualization)
  • 37GRCh38
  • 37hg19
Lab
  • 37AMP-T2D consortium
Audit category:
  • 2missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

37 results

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Clear Filters
ChIP-seq
DNase-seq
tissue
islet of Langerhans13
liver12
body of pancreas2
brain2
omental fat pad1
in vitro differentiated cells
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
stem cell
hESC2
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