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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
15
DNase-seq
4
ATAC-seq
2
Hi-C
1
pCHi-C
Assay category
19
DNA accessibility
15
DNA binding
2
3D chromatin structure
Target of assay
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
13
August, 2017
10
June, 2019
4
February, 2023
3
November, 2018
2
October, 2019
2
September, 2017
1
February, 2021
1
July, 2019
1
November, 2020
Available data
1219
bam
1128
bigWig
891
tsv
513
fastq
251
bed narrowPeak
103
bigBed narrowPeak
80
zippedFastqFolder
40
tagAlign
37
bed bed3+
31
bed broadPeak
16
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
8
bedpe bed3+
7
hic
6
bed bed3
6
txt
4
bed bedgraph
3
cool
2
hdf5
1
bedpe
Organism
37
Homo sapiens
Biosample type
22
tissue
8
primary cell
5
in vitro differentiated cells
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
22
pancreas
21
epithelium
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
4
artery
4
eye
3
embryo
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
37
AMP
Genome assembly (visualization)
34
hg19
31
GRCh38
Lab
37
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
lab.title!
Struan F.A. Grant, CHOP
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
14
body of pancreas
4
omental fat pad
2
pancreas
2
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
preadipocyte
1
cell line
Panc1
1
1
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