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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
DNase-seq
4
Hi-C
3
ChIP-seq
1
pCHi-C
Assay category
41
DNA accessibility
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
34
June, 2019
5
November, 2018
4
July, 2019
August, 2017
3
August, 2021
2
October, 2019
1
February, 2021
Available data
1000
bam
911
bigWig
700
bed narrowPeak
504
bigBed narrowPeak
458
fastq
258
tsv
190
tagAlign
114
bed broadPeak
105
bigBed broadPeak
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
49
Homo sapiens
Biosample type
34
tissue
14
primary cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
21
epithelium
18
ureter
16
connective tissue
13
vasculature
11
blood vessel
10
liver
10
pancreas
4
artery
4
eye
3
embryo
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
49
AMP
Genome assembly (visualization)
44
GRCh38
39
hg19
Lab
49
AMP-T2D consortium
month_released!
August, 2017
BIOSAMPLE
ASSAY
49 results
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DNase-seq
Hi-C
ChIP-seq
pCHi-C
tissue
brain
14
coronary artery
2
frontal cortex
2
liver
2
tibial artery
2
+ See 12 more…
primary cell
hepatocyte
1
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
+ See 3 more…
cell line
HepG2
1
See all biosamples
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