Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1698
candidate regulatory elements
1347
target gene predictions
976
histone modifications
836
accessible chromatin
817
binding sites
124
variant allelic effects
40
chromatin state
13
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2403
February, 2021
1666
September, 2022
331
November, 2021
293
February, 2024
287
June, 2020
284
May, 2021
135
May, 2020
101
October, 2022
January, 2020
56
January, 2021
52
August, 2021
44
March, 2020
41
November, 2022
39
May, 2024
34
August, 2017
31
February, 2023
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
5
January, 2022
5
September, 2023
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5873
bed bed3+
881
tsv
857
bed bed9
480
bigWig
108
txt
34
bed bed9+
34
bigBed bed9
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5827
Homo sapiens
Biosample type
2124
cell line
1788
tissue
1611
primary cell
344
in vitro differentiated cells
4
stem cell
Organ
545
epithelium
329
connective tissue
295
kidney
291
brain
276
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
169
limb
166
heart
165
skin of body
156
pancreas
156
vasculature
137
large intestine
118
blood vessel
112
extraembryonic component
101
liver
96
eye
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
48
ureter
46
adipose tissue
44
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
lymphatic vessel
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
13
mouth
13
nerve
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
vagina
5
trachea
3
nose
Project
5462
AMP
331
ENCODE
60
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
5865
hg19
775
GRCh38
1
hg18
month_released!
January, 2020
organ_slims!
ovary
vagina
BIOSAMPLE
TYPE
5873 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
+ See 760 more…
tissue
stomach
40
21
1
3
heart
37
20
1
3
1
2
kidney
29
14
2
8
1
1
1
brain
29
16
3
1
1
1
lung
33
17
+ See 214 more…
primary cell
monocyte
2
86
18
1
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
17
10
6
endothelial cell
3
7
1
15
2
2
2
1
+ See 330 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 103 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download