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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
DNase-seq
3
Hi-C
Assay category
110
DNA accessibility
3
3D chromatin structure
Date released
108
June, 2019
3
July, 2019
2
November, 2018
Available data
387
bam
386
bed narrowPeak
353
bigWig
231
bigBed narrowPeak
125
bed broadPeak
118
tagAlign
116
bigBed broadPeak
113
bed bed3+
64
xls
62
txt
50
tsv
21
fastq
6
bed bedMethyl
6
bigBed bedMethyl
5
csv
3
hdf5
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
113
Homo sapiens
Biosample type
95
tissue
18
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
113
AMP
Genome assembly (visualization)
110
GRCh38
96
hg19
Lab
113
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
January, 2021
organ_slims!
large intestine
BIOSAMPLE
ASSAY
113 results
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DNase-seq
Hi-C
tissue
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
+ See 17 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 8 more…
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