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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
5
DNase-seq
1
Hi-C
Assay category
21
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
4
June, 2019
November, 2018
2
October, 2019
2
September, 2017
Available data
682
bam
616
bigWig
464
fastq
417
tsv
211
bed narrowPeak
88
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
19
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
hic
6
txt
5
bigBed broadPeak
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
27
Homo sapiens
Biosample type
25
tissue
2
cell line
Organ
78
kidney
36
limb
34
musculature of body
33
brain
30
heart
27
pancreas
26
connective tissue
21
epithelium
18
ureter
13
vasculature
11
blood vessel
10
liver
5
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
Project
27
AMP
Genome assembly (visualization)
27
GRCh38
25
hg19
Lab
27
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
November, 2018
organ_slims!
ovary
spleen
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
21
body of pancreas
2
pancreas
2
cell line
Panc1
1
1
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