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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
DNase-seq
3
ChIP-seq
2
Hi-C
Assay category
6
DNA accessibility
3
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
4
June, 2019
3
August, 2021
2
July, 2019
2
October, 2019
Available data
284
bam
271
bigWig
257
fastq
148
tsv
128
bed narrowPeak
80
zippedFastqFolder
59
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
11
bed bed3+
7
tagAlign
6
hic
5
bedpe bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
cool
2
hdf5
1
tar
Organism
11
Homo sapiens
Biosample type
11
primary cell
Organ
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
11
AMP
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
11
AMP-T2D consortium
month_released!
October, 2017
organ_slims!
kidney
BIOSAMPLE
ASSAY
11 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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