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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
7
DNase-seq
1
Hi-C
Assay category
15
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
13
August, 2017
4
June, 2019
2
November, 2018
2
October, 2019
2
September, 2017
Available data
619
bam
550
bigWig
419
fastq
417
tsv
146
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
23
bed bed3+
13
bed broadPeak
11
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
23
Homo sapiens
Biosample type
21
tissue
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
connective tissue
23
pancreas
20
epithelium
18
ureter
13
vasculature
12
liver
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
embryo
2
nerve
vein
1
spleen
Project
23
AMP
Genome assembly (visualization)
23
GRCh38
21
hg19
Lab
23
AMP-T2D consortium
Audit category:
9
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
October, 2022
organ_slims!
vein
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
15
body of pancreas
4
pancreas
2
cell line
Panc1
1
1
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