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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 202DNase-seq
  • 49ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 207DNA accessibility
  • 49DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 15transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 186June, 2019
  • 29August, 2017
  • 15December, 2017
  • 8November, 2018
  • 8October, 2019
  • 5August, 2021
  • 4February, 2023
  • 4July, 2019
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 2950bam
  • 2744bigWig
  • 1804bed narrowPeak
  • 1314fastq
  • 1199tsv
  • 1032bigBed narrowPeak
  • 390tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 267bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 267Homo sapiens
Biosample type
  • 199tissue
  • 37primary cell
  • 25in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 29pancreas
  • 27connective tissue
  • 21epithelium
  • 18ureter
  • 13liver
  • 13vasculature
  • 11blood vessel
  • adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 267AMP
Genome assembly (visualization)
  • 252GRCh38
  • 244hg19
Lab
  • 263AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • adipose tissue
BIOSAMPLE
ASSAY

267 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
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