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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 196DNase-seq
  • 42ChIP-seq
  • 4Hi-C
  • 2total RNA-seq
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 197DNA accessibility
  • 42DNA binding
  • 43D chromatin structure
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 13narrow histone mark
  • 12broad histone mark
  • 9transcription factor
  • 8control
  • 2RNA binding protein
Date released
  • 181June, 2019
  • 22August, 2017
  • 15December, 2017
  • 8November, 2018
  • 8October, 2019
  • 3August, 2021
  • 3July, 2019
  • 2May, 2021
  • 2September, 2017
  • 1February, 2021
  • 1May, 2022
Available data
  • 2799bam
  • 2599bigWig
  • 1742bed narrowPeak
  • 1257fastq
  • 1122tsv
  • 1014bigBed narrowPeak
  • 376tagAlign
  • 312bed broadPeak
  • 276bigBed broadPeak
  • 246bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 8csv
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 246Homo sapiens
Biosample type
  • 199tissue
  • 29primary cell
  • 12in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 29pancreas
  • connective tissue
  • 21epithelium
  • 18ureter
  • 13liver
  • 13vasculature
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 246AMP
Genome assembly (visualization)
  • 239GRCh38
  • 224hg19
Lab
  • 244AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
Audit category:
  • 3inconsistent ontology term
  • 1audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

246 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
endothelial cell of umbilical vein2
in vitro differentiated cells
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
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