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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 188DNase-seq
  • 50ChIP-seq
  • 4ATAC-seq
  • 3Hi-C
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 193DNA accessibility
  • 50DNA binding
  • 33D chromatin structure
  • 2Transcription
Target of assay
  • 22histone
  • 22histone modification
  • 19transcription factor
  • 11broad histone mark
  • 11narrow histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 173June, 2019
  • 33August, 2017
  • 15December, 2017
  • 9November, 2018
  • 6October, 2019
  • 4February, 2023
  • 2August, 2021
  • 2February, 2021
  • 2July, 2019
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 3075bam
  • 2868bigWig
  • 1666bed narrowPeak
  • 1444tsv
  • 1101fastq
  • 966bigBed narrowPeak
  • 391tagAlign
  • 300bed broadPeak
  • 263bigBed broadPeak
  • 252bed bed3+
  • 161txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 18bedpe bed3+
  • 17hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 252Homo sapiens
Biosample type
  • 205tissue
  • 25in vitro differentiated cells
  • 16primary cell
  • 3cell line
  • 3stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 29pancreas
  • 27connective tissue
  • epithelium
  • 18ureter
  • 13liver
  • 13vasculature
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 252AMP
Genome assembly (visualization)
  • 239GRCh38
  • 235hg19
Lab
  • 248AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 5inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

252 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
primary cell
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain pericyte11
osteoblast11
cell line
Panc111
HepG21
stem cell
hESC3
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