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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 199DNase-seq
  • 47ChIP-seq
  • 4ATAC-seq
  • 4Hi-C
  • 2Capture-C
  • 2snATAC-seq
  • 2total RNA-seq
  • 1pCHi-C
Assay category
  • 205DNA accessibility
  • 47DNA binding
  • 43D chromatin structure
  • 2Transcription
Target of assay
  • 22histone
  • 22histone modification
  • 17transcription factor
  • 11broad histone mark
  • 11narrow histone mark
  • 8control
  • 2RNA binding protein
Date released
  • 185June, 2019
  • 30August, 2017
  • 15December, 2017
  • 8October, 2019
  • 6November, 2018
  • 4February, 2023
  • 3July, 2019
  • 2August, 2021
  • 2May, 2021
  • 2September, 2017
  • 1February, 2021
  • 1July, 2025
  • 1May, 2022
  • 1November, 2020
Available data
  • 2711bam
  • 2547bigWig
  • 1427tsv
  • 1376bed narrowPeak
  • 893fastq
  • 684bigBed narrowPeak
  • 312tagAlign
  • 261bed bed3+
  • 259bed broadPeak
  • 222bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1tbi
Organism
  • 260Homo sapiens
Biosample type
  • 200tissue
  • 31primary cell
  • 25in vitro differentiated cells
  • 3stem cell
  • 2cell line
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 35musculature of body
  • 30heart
  • 29pancreas
  • 27connective tissue
  • 21epithelium
  • 18ureter
  • liver
  • 13vasculature
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 261AMP
Genome assembly (visualization)
  • 248GRCh38
  • 237hg19
Lab
  • 256AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • liver
BIOSAMPLE
ASSAY

261 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
snATAC-seq
total RNA-seq
pCHi-C
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
brain pericyte11
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
stem cell
hESC3
cell line
Panc111
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