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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 193DNase-seq
  • 53ChIP-seq
  • 4ATAC-seq
  • 3Hi-C
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 198DNA accessibility
  • 53DNA binding
  • 33D chromatin structure
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 19transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 180June, 2019
  • 33August, 2017
  • 15December, 2017
  • 9November, 2018
  • 5August, 2021
  • 4February, 2023
  • 4October, 2019
  • 2February, 2021
  • 2July, 2019
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 3207bam
  • 3014bigWig
  • 1684bed narrowPeak
  • 1532tsv
  • 1352fastq
  • 959bigBed narrowPeak
  • 392tagAlign
  • 305bed broadPeak
  • 268bigBed broadPeak
  • 260bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 21bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3cool
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 260Homo sapiens
Biosample type
  • 200tissue
  • 29primary cell
  • 25in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 29pancreas
  • 27connective tissue
  • 21epithelium
  • 18ureter
  • 13liver
  • vasculature
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 260AMP
Genome assembly (visualization)
  • 247GRCh38
  • 238hg19
Lab
  • 256AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 5inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • vasculature
BIOSAMPLE
ASSAY

260 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain pericyte11
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
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