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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
6
DNase-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
10
DNA accessibility
7
DNA binding
1
3D chromatin structure
Target of assay
6
transcription factor
1
control
Date released
7
August, 2017
5
June, 2019
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2020
Available data
151
bam
145
bigWig
77
tsv
62
bed narrowPeak
57
fastq
21
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
21
Homo sapiens
Biosample type
13
in vitro differentiated cells
8
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
ureter
13
liver
13
vasculature
11
blood vessel
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
21
AMP
Genome assembly (visualization)
20
hg19
13
GRCh38
Lab
19
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
4
inconsistent control read length
organ_slims!
adipose tissue
ureter
BIOSAMPLE
ASSAY
21 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
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