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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
8
DNase-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
12
DNA accessibility
11
DNA binding
1
3D chromatin structure
Target of assay
10
transcription factor
1
control
Date released
11
August, 2017
6
June, 2019
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2018
1
November, 2020
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
27
Homo sapiens
Biosample type
13
in vitro differentiated cells
8
primary cell
6
tissue
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
27
AMP
Genome assembly (visualization)
26
hg19
19
GRCh38
Lab
25
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
tissue
white adipose tissue
4
omental fat pad
2
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