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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
5
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
35
DNA accessibility
5
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
control
Date released
32
June, 2019
3
August, 2021
3
November, 2018
2
August, 2017
1
February, 2021
1
July, 2019
Available data
833
bigWig
771
bam
632
bed narrowPeak
452
bigBed narrowPeak
388
fastq
342
tsv
93
bed broadPeak
93
bigBed broadPeak
62
tagAlign
42
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
42
Homo sapiens
Biosample type
32
tissue
9
primary cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
pancreas
26
connective tissue
21
epithelium
18
ureter
13
vasculature
12
liver
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
embryo
2
nerve
2
vein
1
spleen
Project
42
AMP
Genome assembly (visualization)
40
GRCh38
39
hg19
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
42 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
heart
18
liver
2
2
heart left ventricle
3
coronary artery
2
right atrium auricular region
2
+ See 3 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
cell line
HepG2
1
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