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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
12
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
12
DNA accessibility
12
DNA binding
2
3D chromatin structure
Target of assay
histone
15
histone modification
9
transcription factor
8
narrow histone mark
7
broad histone mark
3
control
2
RNA binding protein
Date released
10
August, 2017
6
June, 2019
5
November, 2018
2
October, 2019
2
September, 2017
1
February, 2021
1
July, 2019
Available data
1154
bam
1021
bigWig
792
fastq
591
tsv
448
bed narrowPeak
365
bigBed narrowPeak
80
zippedFastqFolder
58
bed broadPeak
56
bigBed broadPeak
32
tagAlign
27
bed bed3+
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
6
txt
3
cool
3
tar
2
hdf5
1
bed bed3
1
bedpe
1
csv
1
vcf
Organism
27
Homo sapiens
Biosample type
21
tissue
3
cell line
3
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
connective tissue
18
epithelium
18
ureter
17
pancreas
13
vasculature
11
blood vessel
10
liver
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
embryo
1
spleen
Project
27
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
27
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
histone
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
9
liver
3
2
body of pancreas
4
pancreas
2
right lobe of liver
1
cell line
Panc1
1
1
HepG2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
hepatocyte
1
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