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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 6ChIP-seq
  • 5DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 6DNA binding
  • 5DNA accessibility
  • 13D chromatin structure
Target of assay
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 2transcription factor
  • 1broad histone mark
  • 1control
Date released
  • 3August, 2017
  • 3August, 2021
  • 3November, 2018
  • 2June, 2019
  • 1February, 2021
  • 1July, 2019
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 13Homo sapiens
Biosample type
  • 6primary cell
  • 6tissue
  • 1cell line
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 29pancreas
  • 27connective tissue
  • 21epithelium
  • 18ureter
  • 13liver
  • 13vasculature
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 13AMP
Genome assembly (visualization)
  • 13hg19
  • 11GRCh38
Lab
  • 13AMP-T2D consortium
BIOSAMPLE
ASSAY

13 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
hepatocyte31
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
tissue
liver32
right lobe of liver1
cell line
HepG21
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